STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104592897Uncharacterized protein LOC104592897 isoform X1. (201 aa)    
Predicted Functional Partners:
LOC104590342
Protein TONSOKU.
    
 0.974
LOC104595058
Probable lysine-specific demethylase ELF6 isoform X1.
   
 0.903
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.880
LOC104610188
Uncharacterized protein At5g08430-like isoform X1.
   
 0.876
LOC104590239
Chromatin structure-remodeling complex protein SYD isoform X1.
   
 0.842
LOC104587396
Histone-lysine N-methyltransferase SUVR5.
   
 0.809
LOC104595796
Histone-lysine N-methyltransferase SUVR5-like isoform X1.
   
 0.809
LOC104588045
Chromatin remodeling protein EBS-like isoform X1.
    
 0.787
LOC104594083
Chromatin remodeling protein EBS-like isoform X1.
    
 0.787
LOC104605522
Chromatin remodeling protein EBS-like isoform X1.
    
 0.787
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.