STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104596526tryptophan--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family. (400 aa)    
Predicted Functional Partners:
LOC104593631
tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.955
LOC104590895
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.864
LOC104602208
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.864
LOC104612902
serine--tRNA ligase, chloroplastic/mitochondrial isoform X1.
  
 
 0.763
LOC104589077
tyrosine--tRNA ligase 1, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.742
LOC104596465
serine--tRNA ligase-like.
  
 
 0.722
LOC104612328
serine--tRNA ligase-like.
  
 
 0.722
LOC104608092
leucine--tRNA ligase, chloroplastic/mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.715
LOC104611515
Tyrosine--tRNA ligase.
  
  
 0.714
LOC104589945
isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.710
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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