STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104597215Putative tRNA pseudouridine synthase isoform X1. (522 aa)    
Predicted Functional Partners:
LOC104596564
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.840
LOC104597965
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.655
LOC104591513
Uncharacterized protein LOC104591513.
   
 0.631
LOC104593065
Uncharacterized protein LOC104593065.
   
 0.631
LOC104593067
Uncharacterized protein LOC104593067 isoform X1.
   
 0.631
LOC104594877
Uncharacterized protein LOC104594877 isoform X1.
   
 0.631
LOC104602608
Uncharacterized protein LOC104602608.
   
 0.631
LOC104609065
H/ACA ribonucleoprotein complex subunit 4.
   
 0.631
LOC104587938
Uncharacterized protein LOC104587938; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.621
LOC104589257
Uncharacterized protein LOC104589257 isoform X1; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.621
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.