STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104593532RNA polymerase I termination factor. (702 aa)    
Predicted Functional Partners:
LOC104602122
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.818
LOC104597694
TATA-box-binding protein-like isoform X1.
   
 
 0.776
LOC104611161
TATA-box-binding protein.
   
 
 0.776
LOC104609240
DNA-directed RNA polymerase I subunit rpa49.
    
 0.765
LOC104612457
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.748
LOC104591261
DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.
    
  0.737
LOC104589764
Probable DNA-directed RNA polymerase I subunit RPA43 isoform X1.
    
 0.733
LOC104607474
Probable DNA-directed RNA polymerase I subunit RPA43.
    
 0.733
LOC104609172
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic.
   
 
  0.692
LOC104593642
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.677
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.