STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104593605Transcription factor IIIA. (374 aa)    
Predicted Functional Partners:
LOC104602131
GATA transcription factor 1.
    
 0.514
LOC104588877
LOW QUALITY PROTEIN: serine/threonine-protein kinase ATG1t.
   
 0.486
LOC104586000
High mobility group B protein 15-like.
    
 0.463
LOC104594344
High mobility group B protein 10.
    
 0.463
LOC104603688
High mobility group B protein 9-like.
    
 0.463
LOC104604329
High mobility group B protein 9-like isoform X1.
    
 0.463
LOC104609423
High mobility group B protein 15-like isoform X1.
    
 0.463
LOC104611626
Zinc finger protein ZAT10.
      
 0.446
LOC104590239
Chromatin structure-remodeling complex protein SYD isoform X1.
    
 0.436
LOC104592113
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
    
 0.433
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.