STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104594113Uncharacterized protein LOC104594113. (763 aa)    
Predicted Functional Partners:
LOC104587251
Embryonic protein DC-8-like.
   
 
 0.708
LOC104593082
Protein NBR1 homolog.
      
 0.561
LOC104610852
Plastid division protein CDP1, chloroplastic.
  
  
 0.516
LOC104596236
Uncharacterized protein LOC104596236.
  
 
   0.505
LOC104586036
Probable transcription factor At3g04930.
  
 
   0.497
LOC104598018
Probable ubiquitin conjugation factor E4.
    
 
 0.448
LOC104605967
Arginine/serine-rich protein PNISR-like.
  
     0.441
LOC104586966
Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial.
  
     0.431
LOC104600243
Heat shock protein 90-5, chloroplastic-like.
   
 
 0.431
LOC104597851
Heat shock protein 90-5, chloroplastic-like.
   
 
 0.431
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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