STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104598492Uncharacterized protein LOC104598492. (313 aa)    
Predicted Functional Partners:
LOC104596072
Uncharacterized protein LOC104596072.
      
 0.510
LOC104600354
UV-B-induced protein At3g17800, chloroplastic.
      
 0.510
LOC104600294
Uncharacterized protein LOC104600294.
      
 0.510
LOC104609984
Uncharacterized protein LOC104609984 isoform X1.
      
 0.504
LOC104607554
Uncharacterized protein LOC104607554.
      
 0.489
LOC104598513
F-box only protein 21.
      
 0.461
LOC104603731
Uncharacterized protein LOC104603731.
      
 0.437
LOC104603879
Uncharacterized protein LOC104603879.
      
 0.437
LOC104611846
ATP-dependent Clp protease proteolytic subunit; Belongs to the peptidase S14 family.
      
 0.422
LOC104595497
Protein EXECUTER 1, chloroplastic.
      
 0.420
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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