STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104597038AT-rich interactive domain-containing protein 1A-like. (1660 aa)    
Predicted Functional Partners:
LOC104609554
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 
 0.464
LOC104586871
Putative E3 ubiquitin-protein ligase RF298.
  
    0.446
LOC104609080
Centromere-associated protein E isoform X1.
  
     0.443
LOC104611116
Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.
    
 
 0.438
LOC104602582
RING-type E3 ubiquitin transferase.
  
     0.424
LOC104594910
RING-type E3 ubiquitin transferase.
  
     0.421
LOC104604790
Uncharacterized protein At4g10930 isoform X1.
  
     0.407
LOC104604951
Histone-lysine N-methyltransferase ATXR3-like isoform X1.
  
     0.407
LOC104585741
Histone-lysine N-methyltransferase ATXR3-like isoform X1.
  
     0.406
LOC104589643
Light-inducible protein CPRF2-like.
    
 
 0.405
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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