STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104594900PHD finger protein ALFIN-LIKE 1. (242 aa)    
Predicted Functional Partners:
LOC104605200
Multiple organellar RNA editing factor 3, mitochondrial.
    
 
 0.712
LOC104606324
Protein TRAUCO-like isoform X1.
   
 
 0.667
LOC104613399
Protein TRAUCO-like isoform X1.
   
 
 0.667
LOC104610188
Uncharacterized protein At5g08430-like isoform X1.
    
 
 0.654
LOC104607600
Protein RBL.
    
 
 0.652
LOC104611675
Protein RBL-like.
    
 
 0.652
LOC104593120
WD repeat-containing protein 82.
    
 
 0.630
LOC104599549
WD repeat-containing protein 82-B isoform X1.
    
 
 0.630
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.583
LOC104607638
ubiquitin-60S ribosomal protein L40.
    
   0.528
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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