STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104598461Autophagy-related protein 3. (314 aa)    
Predicted Functional Partners:
LOC104607014
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
    
 0.998
LOC104589557
Autophagy protein 5; Required for autophagy.
   
 0.997
LOC104591555
Autophagy-related protein 16-like.
   
 0.994
LOC104593020
Autophagy-related protein 16-like.
   
 0.994
LOC104607118
Autophagy-related protein.
   
 0.990
LOC104598547
Autophagy-related protein.
   
 0.988
LOC104602316
Autophagy-related protein.
   
 0.988
LOC104612790
Autophagy-related protein.
   
 0.988
LOC104610951
Autophagy-related protein.
   
 0.988
LOC104612141
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.957
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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