STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104598516WAT1-related protein. (357 aa)    
Predicted Functional Partners:
LOC104597694
TATA-box-binding protein-like isoform X1.
    
 0.820
LOC104611161
TATA-box-binding protein.
    
 0.820
LOC104609240
DNA-directed RNA polymerase I subunit rpa49.
     
 0.795
LOC104612457
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.760
LOC104608523
RNA polymerase I-specific transcription initiation factor RRN3-like.
    
 0.726
LOC104608522
RNA polymerase I-specific transcription initiation factor RRN3-like.
    
 0.726
LOC104586092
Adenylylsulfatase HINT3 isoform X1.
    
 0.717
LOC104593473
Uncharacterized protein LOC104593473.
    
 0.717
LOC104593485
14 kDa zinc-binding protein.
    
 0.717
LOC104599674
14 kDa zinc-binding protein.
    
 0.717
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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