STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104596236Uncharacterized protein LOC104596236. (718 aa)    
Predicted Functional Partners:
LOC104604254
Classical arabinogalactan protein 9.
   
 0.655
LOC104606505
Uncharacterized protein LOC104606505.
  
 
   0.509
LOC104594113
Uncharacterized protein LOC104594113.
  
 
   0.505
LOC104586036
Probable transcription factor At3g04930.
  
  0.488
LOC104594261
Sister chromatid cohesion protein PDS5 homolog B.
  
 
  0.467
LOC104587885
Sister chromatid cohesion protein PDS5 homolog A-like isoform X1.
  
 
  0.464
LOC104595058
Probable lysine-specific demethylase ELF6 isoform X1.
  
 
  0.446
LOC104592274
Pentatricopeptide repeat-containing protein At1g73400, mitochondrial.
  
 
   0.426
LOC104598819
BRCT domain-containing protein At4g02110.
  
 
  0.409
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.