LOC104599628 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

LOC104599628

Protein FAR1-RELATED SEQUENCE 5-like. (257 aa)

Predicted Functional Partners:

LOC104600869

0.628

LOC104605324

0.522

LOC104597134

0.501

LOC104601077

0.498

LOC104589302

0.497

LOC104600031

0.497

LOC104597132

0.494

LOC104586161

0.480

LOC104586109

0.479

LOC104607156

0.467

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104586109	LOC104589302	A0A1U7Z444	A0A1U7ZD70	SWR1-complex protein 4.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.947
LOC104586109	LOC104599628	A0A1U7Z444	A0A1U8A6H2	SWR1-complex protein 4.	Protein FAR1-RELATED SEQUENCE 5-like.	0.479
LOC104586109	LOC104600031	A0A1U7Z444	A0A1U8A286	SWR1-complex protein 4.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.947
LOC104586109	LOC104600869	A0A1U7Z444	A0A1U8AAP3	SWR1-complex protein 4.	Chromatin modification-related protein MEAF6.	0.978
LOC104586109	LOC104605324	A0A1U7Z444	A0A1U8AY87	SWR1-complex protein 4.	Transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family.	0.992
LOC104586161	LOC104597132	A0A1U7YRJ7	A0A1U7ZRH5	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104597132.	0.520
LOC104586161	LOC104597134	A0A1U7YRJ7	A0A1U8A4X0	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104597134.	0.524
LOC104586161	LOC104599628	A0A1U7YRJ7	A0A1U8A6H2	Uncharacterized protein LOC104586161 isoform X1.	Protein FAR1-RELATED SEQUENCE 5-like.	0.480
LOC104586161	LOC104601077	A0A1U7YRJ7	A0A1U8A5T0	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104601077.	0.521
LOC104589302	LOC104586109	A0A1U7ZD70	A0A1U7Z444	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	SWR1-complex protein 4.	0.947
LOC104589302	LOC104599628	A0A1U7ZD70	A0A1U8A6H2	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Protein FAR1-RELATED SEQUENCE 5-like.	0.497
LOC104589302	LOC104600869	A0A1U7ZD70	A0A1U8AAP3	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Chromatin modification-related protein MEAF6.	0.973
LOC104589302	LOC104605324	A0A1U7ZD70	A0A1U8AY87	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family.	0.973
LOC104597132	LOC104586161	A0A1U7ZRH5	A0A1U7YRJ7	Uncharacterized protein LOC104597132.	Uncharacterized protein LOC104586161 isoform X1.	0.520
LOC104597132	LOC104599628	A0A1U7ZRH5	A0A1U8A6H2	Uncharacterized protein LOC104597132.	Protein FAR1-RELATED SEQUENCE 5-like.	0.494
LOC104597132	LOC104607156	A0A1U7ZRH5	A0A1U8B4I0	Uncharacterized protein LOC104597132.	Uncharacterized protein LOC104607156.	0.514
LOC104597134	LOC104586161	A0A1U8A4X0	A0A1U7YRJ7	Uncharacterized protein LOC104597134.	Uncharacterized protein LOC104586161 isoform X1.	0.524
LOC104597134	LOC104599628	A0A1U8A4X0	A0A1U8A6H2	Uncharacterized protein LOC104597134.	Protein FAR1-RELATED SEQUENCE 5-like.	0.501
LOC104597134	LOC104607156	A0A1U8A4X0	A0A1U8B4I0	Uncharacterized protein LOC104597134.	Uncharacterized protein LOC104607156.	0.520
LOC104599628	LOC104586109	A0A1U8A6H2	A0A1U7Z444	Protein FAR1-RELATED SEQUENCE 5-like.	SWR1-complex protein 4.	0.479

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Network Stats

number of nodes:

11

number of edges:

43

average node degree:

7.82

avg. local clustering coefficient:

0.914

expected number of edges:

11

PPI enrichment p-value:

1.49e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 238

1.21

1.69

1.22e-08

GO:0032543

Mitochondrial translation

4 of 38

1.6

1.46

0.00047

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

8 of 129

1.37

1.95

1.70e-07

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005761

Mitochondrial ribosome

8 of 53

1.76

3.53

1.38e-10

GO:0005762

Mitochondrial large ribosomal subunit

6 of 31

1.87

3.18

2.42e-08

GO:0044391

Ribosomal subunit

8 of 114

1.43

2.23

1.45e-08

GO:0098798

Mitochondrial protein-containing complex

8 of 148

1.31

1.9

4.00e-08

GO:0005739

Mitochondrion

10 of 548

0.84

0.87

1.08e-06

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2676

Organellar ribosome

8 of 38

1.91

4.35

3.64e-12

CL:2671

Organellar ribosome

9 of 53

1.81

4.19

8.08e-13

CL:2678

Organellar large ribosomal subunit

5 of 18

2.03

3.17

1.30e-07

CL:2680

Organellar large ribosomal subunit

4 of 10

2.18

2.82

2.10e-06

CL:2714

Organellar small ribosomal subunit, and Organellar large ribosomal subunit

3 of 19

1.78

1.37

0.0015

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

7 of 140

1.28

1.6

2.17e-06

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72766

Translation

9 of 206

1.22

1.65

8.45e-08

MAP-392499

Metabolism of proteins

11 of 605

0.84

0.89

2.55e-07

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005761

Mitochondrial ribosome

8 of 52

1.77

3.55

1.38e-10

GOCC:0005762

Mitochondrial large ribosomal subunit

6 of 31

1.87

3.2

2.01e-08

GOCC:0044391

Ribosomal subunit

8 of 117

1.42

2.2

1.52e-08

GOCC:0098798

Mitochondrial protein complex

8 of 125

1.39

2.11

2.01e-08

GOCC:0005739

Mitochondrion

10 of 425

0.95

1.1

1.15e-07

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

5 of 107

1.25

1.08

0.0010

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