STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104597950Protein RIK isoform X1. (617 aa)    
Predicted Functional Partners:
LOC104600027
E3 ubiquitin-protein ligase RKP isoform X1.
      
 0.596
LOC104606731
Probable polygalacturonase.
      
 0.569
LOC104605587
Zinc finger protein ZOP1.
      
 0.558
LOC104607012
Beta-catenin-like protein 1.
      
 0.558
LOC104589994
Cell division cycle 5-like protein.
    
 
 0.513
LOC104608301
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
      
 0.489
LOC104599720
Polygalacturonase QRT3 isoform X1.
      
 0.485
LOC104588695
Protein CWC15 homolog.
      
 0.467
LOC104594287
Protein CWC15 homolog.
      
 0.467
LOC104603687
Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; Belongs to the FPP/GGPP synthase family.
      
 0.467
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.