STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104602575Asparagine synthetase [glutamine-hydrolyzing]. (589 aa)    
Predicted Functional Partners:
LOC104588131
Probable isoaspartyl peptidase/L-asparaginase 2.
     
 0.944
LOC104597874
Isoaspartyl peptidase/L-asparaginase 1.
     
 0.944
LOC104607126
Probable isoaspartyl peptidase/L-asparaginase 2.
     
 0.944
LOC104589052
Aspartate aminotransferase.
   
 
 0.940
LOC104589736
Aspartate aminotransferase.
   
 
 0.940
LOC104592600
Aspartate aminotransferase.
   
 
 0.940
LOC104597204
Aspartate aminotransferase.
   
 
 0.940
LOC104595171
Aspartate aminotransferase.
   
 
 0.940
LOC104602468
Aspartate aminotransferase.
   
 
 0.940
LOC104610467
Argininosuccinate synthase, chloroplastic.
   
 0.938
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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