LOC104603162 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104603162

ACT domain-containing protein DS12, chloroplastic isoform X1. (285 aa)

Predicted Functional Partners:

LOC104586887

0.503

LOC104610663

0.493

LOC104587361

0.491

LOC104604537

0.491

LOC104596403

0.468

LOC104589196

0.455

LOC104594585

0.420

LOC104599315

0.420

LOC104599213

0.420

LOC104608850

0.420

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104586887	LOC104603162	A0A1U7Z6P6	A0A1U8AD51	Uncharacterized protein At4g15545 isoform X1.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.503
LOC104586887	LOC104610663	A0A1U7Z6P6	A0A1U8BGJ8	Uncharacterized protein At4g15545 isoform X1.	28S ribosomal protein S29, mitochondrial isoform X1.	0.465
LOC104587361	LOC104603162	A0A1U7YVC4	A0A1U8AD51	ACT domain-containing protein ACR10-like.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.491
LOC104589196	LOC104603162	A0A1U7Z132	A0A1U8AD51	Uncharacterized protein LOC104589196.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.455
LOC104594585	LOC104603162	A0A1U7ZW02	A0A1U8AD51	ACT domain-containing protein ACR9-like isoform X1.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.420
LOC104596403	LOC104603162	A0A1U7ZUM7	A0A1U8AD51	Glutamine synthetase.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.468
LOC104599213	LOC104603162	A0A1U8ACR7	A0A1U8AD51	ACT domain-containing protein ACR9-like isoform X1.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.420
LOC104599315	LOC104603162	A0A1U8A1N2	A0A1U8AD51	Zinc finger protein GIS2-like.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.420
LOC104603162	LOC104586887	A0A1U8AD51	A0A1U7Z6P6	ACT domain-containing protein DS12, chloroplastic isoform X1.	Uncharacterized protein At4g15545 isoform X1.	0.503
LOC104603162	LOC104587361	A0A1U8AD51	A0A1U7YVC4	ACT domain-containing protein DS12, chloroplastic isoform X1.	ACT domain-containing protein ACR10-like.	0.491
LOC104603162	LOC104589196	A0A1U8AD51	A0A1U7Z132	ACT domain-containing protein DS12, chloroplastic isoform X1.	Uncharacterized protein LOC104589196.	0.455
LOC104603162	LOC104594585	A0A1U8AD51	A0A1U7ZW02	ACT domain-containing protein DS12, chloroplastic isoform X1.	ACT domain-containing protein ACR9-like isoform X1.	0.420
LOC104603162	LOC104596403	A0A1U8AD51	A0A1U7ZUM7	ACT domain-containing protein DS12, chloroplastic isoform X1.	Glutamine synthetase.	0.468
LOC104603162	LOC104599213	A0A1U8AD51	A0A1U8ACR7	ACT domain-containing protein DS12, chloroplastic isoform X1.	ACT domain-containing protein ACR9-like isoform X1.	0.420
LOC104603162	LOC104599315	A0A1U8AD51	A0A1U8A1N2	ACT domain-containing protein DS12, chloroplastic isoform X1.	Zinc finger protein GIS2-like.	0.420
LOC104603162	LOC104604537	A0A1U8AD51	A0A1U8AVG5	ACT domain-containing protein DS12, chloroplastic isoform X1.	ACT domain-containing protein ACR10-like.	0.491
LOC104603162	LOC104608850	A0A1U8AD51	A0A1U8BAV5	ACT domain-containing protein DS12, chloroplastic isoform X1.	ACT domain-containing protein ACR1 isoform X1.	0.420
LOC104603162	LOC104610663	A0A1U8AD51	A0A1U8BGJ8	ACT domain-containing protein DS12, chloroplastic isoform X1.	28S ribosomal protein S29, mitochondrial isoform X1.	0.493
LOC104604537	LOC104603162	A0A1U8AVG5	A0A1U8AD51	ACT domain-containing protein ACR10-like.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.491
LOC104608850	LOC104603162	A0A1U8BAV5	A0A1U8AD51	ACT domain-containing protein ACR1 isoform X1.	ACT domain-containing protein DS12, chloroplastic isoform X1.	0.420