STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603706Large proline-rich protein bag6-B. (950 aa)    
Predicted Functional Partners:
LOC104597276
Golgi to ER traffic protein 4 homolog.
    
 0.945
LOC104587827
Small glutamine-rich tetratricopeptide repeat-containing protein.
   
 0.751
LOC104588575
Large proline-rich protein BAG6-like.
  
  
 
0.584
LOC104588496
Large proline-rich protein BAG6-like isoform X1.
  
  
 
0.573
LOC104601129
Tropomyosin isoform X1.
      
 0.562
LOC104587829
Uncharacterized protein LOC104587829 isoform X1.
      
 0.560
LOC104596164
Plant UBX domain-containing protein 8-like isoform X1.
   
 
 0.541
LOC104612716
Plant UBX domain-containing protein 8-like.
   
 
 0.541
LOC104594217
Plant UBX domain-containing protein 10.
    
 
 0.533
LOC104604720
Plant UBX domain-containing protein 10-like.
    
 
 0.533
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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