STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603784Pentatricopeptide repeat-containing protein At2g17525, mitochondrial. (627 aa)    
Predicted Functional Partners:
LOC104592113
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
   
 
 0.590
LOC104604852
Septum-promoting GTP-binding protein 1-like.
    
   0.577
LOC104610880
Septum-promoting GTP-binding protein 1.
    
   0.577
LOC104587223
Serine/threonine-protein kinase ATM isoform X1; Belongs to the PI3/PI4-kinase family.
    
 0.538
TTG1
Protein TRANSPARENT TESTA GLABRA 1.
   
 
 0.525
LOC104592679
WD repeat-containing protein LWD1.
   
 
 0.525
LOC104598337
WD repeat-containing protein LWD1-like.
   
 
 0.525
LOC104607629
WD repeat-containing protein LWD1-like.
   
 
 0.525
LOC104601719
SUMO-conjugating enzyme SCE1-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.479
LOC104606930
SUMO-conjugating enzyme SCE1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.479
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.