STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104600540RING-box protein 1a. (120 aa)    
Predicted Functional Partners:
LOC104609156
Polyubiquitin 9.
   
 0.991
LOC104597068
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
   
 0.990
rpl2
Ribosomal protein L2.
   
 0.978
LOC104595740
COP9 signalosome complex subunit 4.
   
 0.977
LOC104590815
Cullin-4-like isoform X1; Belongs to the cullin family.
    
 0.973
LOC104610146
Cullin-4-like; Belongs to the cullin family.
    
 0.973
LOC104590707
DNA damage-binding protein 1.
    
 0.971
LOC104607867
DNA damage-binding protein 1-like.
    
 0.971
LOC104588186
NEDD8-conjugating enzyme Ubc12-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.970
LOC104595763
NEDD8-conjugating enzyme Ubc12-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.970
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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