STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603008Protein CASP. (685 aa)    
Predicted Functional Partners:
LOC104589239
Guanylate kinase 2, chloroplastic/mitochondrial.
    
 
 0.677
LOC104597407
Guanylate kinase 2-like.
    
 
 0.677
LOC104612995
Guanylate kinase 2-like.
    
 
 0.677
LOC104594680
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
   
  
 0.584
LOC104588007
Probable diphthine methyl ester synthase.
      
 0.577
LOC104595675
Nucleolar protein 6 isoform X1.
      
 0.577
LOC104607239
Uncharacterized protein LOC104607239; Belongs to the universal ribosomal protein uS5 family.
      
 0.577
LOC104587159
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
      
 0.576
LOC104594690
Golgin candidate 6.
      
 0.570
LOC104598582
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.500
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.