STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104604842DNA polymerase I A, chloroplastic/mitochondrial. (1182 aa)    
Predicted Functional Partners:
LOC104610895
DNA polymerase I A, chloroplastic/mitochondrial-like isoform X1.
  
  
 
0.901
LOC104598309
Uncharacterized protein LOC104598309 isoform X1.
 
      0.855
LOC104592513
formamidopyrimidine-DNA glycosylase isoform X1.
  
  
 0.775
LOC104609450
DNA repair protein RAD50.
  
 
 0.720
LOC104591943
Exonuclease 1 isoform X1.
  
 
 0.675
LOC104608973
Exonuclease 1 isoform X1.
  
 
 0.675
LOC104585594
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 
 0.660
LOC104608746
Flap endonuclease GEN-like 2.
  
 
 0.660
LOC104612691
Flap endonuclease GEN-like 1.
  
 
 0.660
LOC104608879
Crossover junction endonuclease MUS81 isoform X1.
   
 
 0.637
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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