STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104601075nifU-like protein 3, chloroplastic. (243 aa)    
Predicted Functional Partners:
LOC104588364
Cysteine desulfurase 1, chloroplastic.
  
 0.813
LOC104607007
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 
 0.790
LOC104589121
Cysteine desulfurase, mitochondrial.
  
 0.789
LOC104606959
Cysteine desulfurase, mitochondrial-like.
  
 0.789
LOC104587899
Dihydroxy-acid dehydratase, chloroplastic.
  
 
 0.783
LOC104586046
Probable L-cysteine desulfhydrase, chloroplastic.
  
 0.758
LOC104607171
L-cysteine desulfhydrase-like.
  
 0.758
LOC104599985
Iron-sulfur assembly protein IscA, chloroplastic.
  
 
 0.721
LOC104588663
Uncharacterized protein At5g03900, chloroplastic.
  
 
 0.707
LOC104592670
Monothiol glutaredoxin-S14, chloroplastic.
   
 
 0.679
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.