STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104600866tRNA(Adenine(34)) deaminase, chloroplastic. (1280 aa)    
Predicted Functional Partners:
LOC104593956
Probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1.
   
 0.917
LOC104595633
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.863
LOC104589183
Uncharacterized protein LOC104589183.
    
 0.610
LOC104602989
Uncharacterized protein LOC104602989.
    
 0.610
LOC104594199
Thymidine kinase.
    
 0.607
LOC104606582
Thymidine kinase.
    
 0.607
LOC104596850
Uncharacterized protein LOC104596850.
    
 0.600
LOC104592950
Thymidylate kinase isoform X1.
  
 
 0.599
LOC104604300
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
    
 0.569
LOC104608633
Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like.
    
 0.569
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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