STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104605419Uncharacterized protein LOC104605419. (148 aa)    
Predicted Functional Partners:
LOC104594139
Trigger factor-like protein TIG, Chloroplastic.
   
 
 0.999
LOC104595885
Uncharacterized protein LOC104595885.
  
 
 0.999
LOC104599414
Uncharacterized protein LOC104599414 isoform X1.
  
 
 0.999
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
  
 0.999
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.999
rps2
30S ribosomal protein S2, chloroplastic.
  
 0.999
LOC104607239
Uncharacterized protein LOC104607239; Belongs to the universal ribosomal protein uS5 family.
   
 0.998
LOC104600524
40S ribosomal protein S29.
   
 0.997
LOC104588658
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.994
LOC104593186
40S ribosomal protein S23-like; Belongs to the universal ribosomal protein uS12 family.
  
 0.994
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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