STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104602275Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (403 aa)    
Predicted Functional Partners:
LOC104586697
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.833
LOC104599273
60S ribosomal protein L23A; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.833
LOC104612217
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 0.826
LOC104606157
60S ribosomal protein L7-2.
  
 
 0.823
LOC104610693
60S ribosomal protein L7-1.
  
 
 0.823
LOC104611390
60S ribosomal protein L7-2-like.
  
 
 0.823
LOC104598220
60S ribosomal protein L5.
  
 
 0.809
LOC104602713
60S ribosomal protein L5-like.
  
 
 0.809
LOC104609191
60S ribosomal protein L5-like.
  
 
 0.809
LOC104609534
40S ribosomal protein S15 isoform X1; Belongs to the universal ribosomal protein uS19 family.
  
   0.784
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.