STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104606263Probable calcium-binding protein CML50. (294 aa)    
Predicted Functional Partners:
LOC104599250
Protein WVD2-like 7 isoform X1.
   
 0.677
LOC104597673
Calpain-type cysteine protease DEK1; Belongs to the peptidase C2 family.
   
 0.677
LOC104609923
Protein WVD2-like 7 isoform X1.
   
 0.677
LOC104602366
Putative nitric oxide synthase isoform X1.
     
 0.651
LOC104606298
Protein transport protein SEC31 homolog B-like.
    
 
 0.438
LOC104613418
Protein transport protein SEC31 homolog B-like.
    
 
 0.438
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.