STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104606673Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (769 aa)    
Predicted Functional Partners:
LOC104593849
Protein transport protein Sec24-like At4g32640 isoform X1.
   
0.956
LOC104606298
Protein transport protein SEC31 homolog B-like.
   
 0.946
LOC104613418
Protein transport protein SEC31 homolog B-like.
   
 0.946
LOC104592079
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
   
 0.923
LOC104604510
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
   
 0.923
LOC104607985
Protein transport protein SEC13 homolog B; Belongs to the WD repeat SEC13 family.
   
 0.923
LOC104588818
Protein transport protein Sec24-like At3g07100.
   
0.918
LOC104589420
Protein transport protein Sec24-like At3g07100.
   
0.918
LOC104610113
Protein transport protein Sec24-like At3g07100.
   
0.918
LOC104598519
Protein transport protein sec16.
   
 0.816
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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