STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104605897Aminotransferase ALD1-like. (446 aa)    
Predicted Functional Partners:
LOC104599281
Diaminopimelate epimerase, chloroplastic.
  
 0.954
LOC104600380
4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic-like isoform X1.
     
  0.929
LOC104592765
Aspartokinase 2, chloroplastic-like isoform X1.
  
 0.600
LOC104601951
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
  
  
 0.572
LOC104588511
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
  
 0.566
LOC104603392
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1.
  
  
 0.566
LOC104609470
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.555
LOC104596171
Dihydrodipicolinate reductase-like protein CRR1, chloroplastic.
    
 0.543
LOC104595632
Diaminopimelate decarboxylase 2, chloroplastic-like isoform X1.
  
 
 0.529
LOC104601807
Diaminopimelate decarboxylase 2, chloroplastic-like.
  
 
 0.529
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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