STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104607121CRS2-associated factor 2, chloroplastic. (562 aa)    
Predicted Functional Partners:
LOC104593523
Ribonuclease III domain-containing protein RNC1, chloroplastic.
    
 
 0.581
LOC104607016
Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic.
 
  
 
 0.571
LOC104613142
Transcription termination factor MTERF4, chloroplastic.
   
  
 0.563
LOC104592133
Uncharacterized protein LOC104592133.
      
 0.556
LOC104602455
Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like; Belongs to the PTH family.
   
 
 0.555
ycf3
Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits.
    
 0.544
LOC104593558
Integrator complex subunit 9.
    
 0.533
LOC104612423
CRM-domain containing factor CFM3A, chloroplastic/mitochondrial isoform X1.
 
 
 
0.523
LOC104603974
Protein ROOT PRIMORDIUM DEFECTIVE 1.
    
 
 0.513
LOC104591635
Protein SIEL isoform X1.
    
 0.507
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.