STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603680Ornithine decarboxylase-like; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (426 aa)    
Predicted Functional Partners:
LOC104602265
Arginase 1, mitochondrial; Belongs to the arginase family.
  
 
 0.975
LOC104600373
Spermine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.964
LOC104593236
Spermidine synthase 1; Belongs to the spermidine/spermine synthase family.
  
 0.958
LOC104607898
Spermidine synthase 1; Belongs to the spermidine/spermine synthase family.
  
 0.958
LOC104588772
Ornithine aminotransferase.
    
 0.952
LOC104607001
Probable polyamine oxidase 4.
     
 0.922
LOC104607652
N-carbamoylputrescine amidase.
    
 0.915
LOC104588475
Probable polyamine oxidase 2.
     
 0.910
LOC104610796
Probable polyamine oxidase 2 isoform X1.
     
 0.910
LOC104588735
Ornithine decarboxylase-like; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 
0.902
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.