STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603771HMG1/2-like protein. (155 aa)    
Predicted Functional Partners:
LOC104610054
Actin-related protein 9; Belongs to the actin family.
    
 0.702
LOC104599561
Actin-related protein 4; Belongs to the actin family.
   
 0.674
LOC104597160
Actin-related protein 5 isoform X1; Belongs to the actin family.
    
 0.671
LOC104589524
Probable RNA polymerase II transcription factor B subunit 1-1.
    
 0.628
LOC104596226
Histone deacetylase complex subunit SAP18.
   
 
 0.625
LOC104597477
General transcription factor IIH subunit.
    
 0.615
LOC104604303
INO80 complex subunit C.
    
 0.615
LOC104609135
RNA polymerase II transcription factor B subunit 4 isoform X1.
    
 0.615
LOC104591710
RuvB-like helicase; Belongs to the RuvB family.
    
 0.583
LOC104592893
RuvB-like helicase; Belongs to the RuvB family.
    
 0.583
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.