STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104603979KAT8 regulatory NSL complex subunit 3. (230 aa)    
Predicted Functional Partners:
LOC104592404
Uncharacterized protein LOC104592404 isoform X1.
   
 0.933
LOC104593940
PHD finger protein At1g33420.
    
 0.793
LOC104607232
PHD finger protein PERSISTENT TAPETAL CELL 1.
    
 0.793
LOC104607332
Uncharacterized protein LOC104607332.
    
 0.793
LOC104612675
PHD finger protein MALE MEIOCYTE DEATH 1-like.
    
 0.793
matK
Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.
    
 0.793
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL23 family.
    
 0.793
ycf2
Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family.
    
 0.793
LOC104589302
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.787
LOC104600031
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.787
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.