STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104608219Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (303 aa)    
Predicted Functional Partners:
LOC104599551
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.929
LOC104611289
Flowering time control protein FY.
   
 0.926
LOC104593120
WD repeat-containing protein 82.
    
 0.913
LOC104599549
WD repeat-containing protein 82-B isoform X1.
    
 0.913
LOC104596063
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.855
LOC104610329
Cleavage and polyadenylation specificity factor subunit 3-I.
   
 0.785
LOC104587609
Serine/threonine-protein phosphatase 4 regulatory subunit 2 isoform X1.
    
 0.783
LOC104585866
30-kDa cleavage and polyadenylation specificity factor 30.
    
 0.759
LOC104611855
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.759
LOC104589182
Type 1 phosphatases regulator ypi1.
    
 
 0.676
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.