STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104608660Polyadenylate-binding protein 2. (153 aa)    
Predicted Functional Partners:
LOC104587426
Cleavage stimulating factor 64 isoform X1.
  
 0.935
LOC104596226
Histone deacetylase complex subunit SAP18.
   
 0.919
LOC104610695
FIP1[V]-like protein.
   
 0.901
LOC104594732
Regulator of nonsense transcripts UPF2 isoform X1.
    
 0.890
LOC104589972
Regulator of nonsense transcripts UPF3 isoform X1.
    
 0.871
LOC104587558
Eukaryotic initiation factor 4A-3.
   
 0.862
LOC104601795
Eukaryotic initiation factor 4A-I isoform X1.
   
 0.862
LOC104600068
Apoptotic chromatin condensation inducer in the nucleus.
   
 0.848
LOC104605908
Formin-like.
   
 0.848
LOC104606290
RNA-binding protein 8A-B.
    
 0.802
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.