STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104605853BTB/POZ domain-containing protein At4g08455. (252 aa)    
Predicted Functional Partners:
LOC104593875
E3 ubiquitin-protein ligase CHIP.
   
  
 0.569
LOC104587069
Acetyltransferase At1g77540-like.
      
 0.564
LOC104600540
RING-box protein 1a.
    
 0.497
LOC104586390
Putative cullin-like protein 2; Belongs to the cullin family.
   
 0.490
LOC104597343
cullin-3A-like isoform X1; Belongs to the cullin family.
   
 0.490
LOC104597358
cullin-3A-like; Belongs to the cullin family.
   
 0.490
LOC104599020
Cullin-1; Belongs to the cullin family.
   
 0.490
LOC104606098
Cullin-1-like; Belongs to the cullin family.
   
 0.490
LOC104603826
Uncharacterized protein LOC104603826.
      
 0.476
LOC104609316
Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
      
 0.463
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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