STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104608277Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (169 aa)    
Predicted Functional Partners:
LOC104590400
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
0.998
LOC104604281
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.998
LOC104590533
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.997
LOC104612563
Trafficking protein particle complex II-specific subunit 130 homolog isoform X1.
    
 0.997
LOC104606860
Trafficking protein particle complex subunit 11 isoform X1.
    
 0.992
LOC104590331
Trafficking protein particle complex subunit 6B-like.
   
 0.991
LOC104603334
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.
   
 0.991
LOC104609685
Trafficking protein particle complex subunit 3-like isoform X1.
   
 0.991
LOC104611559
Trafficking protein particle complex subunit 6B-like isoform X1.
   
 0.991
LOC104608535
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.991
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.