STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104610987DEAD-box ATP-dependent RNA helicase 10; Belongs to the DEAD box helicase family. (433 aa)    
Predicted Functional Partners:
LOC104604154
Something about silencing protein 10.
   
 0.980
LOC104611947
Neuroguidin isoform X1.
 
 
 0.970
LOC104603656
pre-rRNA-processing protein ESF1.
   
 
 0.934
LOC104592550
KRR1 small subunit processome component.
   
 0.922
LOC104597638
rRNA biogenesis protein RRP5 isoform X1.
   
 0.903
LOC104597882
Nucleolar protein 14.
   
 0.886
LOC104599586
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.883
LOC104610471
Uncharacterized protein At3g06530 isoform X1.
   
  0.880
LOC104593111
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.874
LOC104612707
Ribosomal RNA processing protein 36 homolog.
   
 0.856
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.