STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104607217Pectinesterase. (563 aa)    
Predicted Functional Partners:
LOC104604548
Pectate lyase.
  
 
  0.712
LOC104599253
Pectate lyase.
  
 
  0.711
LOC104594663
Pectate lyase.
  
 
  0.710
LOC104586789
Pectate lyase.
   
 
  0.652
LOC104587909
Pectate lyase.
   
 
  0.652
LOC104587349
Pectate lyase.
   
 
  0.652
LOC104593013
Pectate lyase.
   
 
  0.652
LOC104591566
Pectate lyase.
   
 
  0.652
LOC104594849
Pectate lyase.
   
 
  0.652
LOC104602148
Pectate lyase.
   
 
  0.652
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.