LOC104607521 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104607521

Protein FAR1-RELATED SEQUENCE 5-like. (752 aa)

Predicted Functional Partners:

LOC104597134

0.512

LOC104601077

0.509

LOC104586161

0.506

LOC104597132

0.506

LOC104607156

0.493

LOC104598454

0.457

LOC104586131

0.452

LOC104586057

0.449

LOC104592496

0.445

LOC104588069

0.444

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104586057	LOC104586131	A0A1U7Z2J6	A0A1U7YNN4	Uncharacterized protein LOC104586057 isoform X1.	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	0.521
LOC104586057	LOC104588069	A0A1U7Z2J6	A0A1U7YUU9	Uncharacterized protein LOC104586057 isoform X1.	Uncharacterized protein LOC104588069.	0.469
LOC104586057	LOC104592496	A0A1U7Z2J6	A0A1U7ZPZ6	Uncharacterized protein LOC104586057 isoform X1.	Zinc finger BED domain-containing protein DAYSLEEPER-like.	0.528
LOC104586057	LOC104597132	A0A1U7Z2J6	A0A1U7ZRH5	Uncharacterized protein LOC104586057 isoform X1.	Uncharacterized protein LOC104597132.	0.462
LOC104586057	LOC104597134	A0A1U7Z2J6	A0A1U8A4X0	Uncharacterized protein LOC104586057 isoform X1.	Uncharacterized protein LOC104597134.	0.473
LOC104586057	LOC104601077	A0A1U7Z2J6	A0A1U8A5T0	Uncharacterized protein LOC104586057 isoform X1.	Uncharacterized protein LOC104601077.	0.466
LOC104586057	LOC104607521	A0A1U7Z2J6	A0A1U8B5M2	Uncharacterized protein LOC104586057 isoform X1.	Protein FAR1-RELATED SEQUENCE 5-like.	0.449
LOC104586131	LOC104586057	A0A1U7YNN4	A0A1U7Z2J6	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104586057 isoform X1.	0.521
LOC104586131	LOC104586161	A0A1U7YNN4	A0A1U7YRJ7	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104586161 isoform X1.	0.505
LOC104586131	LOC104588069	A0A1U7YNN4	A0A1U7YUU9	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104588069.	0.518
LOC104586131	LOC104597132	A0A1U7YNN4	A0A1U7ZRH5	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104597132.	0.577
LOC104586131	LOC104597134	A0A1U7YNN4	A0A1U8A4X0	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104597134.	0.577
LOC104586131	LOC104601077	A0A1U7YNN4	A0A1U8A5T0	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104601077.	0.578
LOC104586131	LOC104607156	A0A1U7YNN4	A0A1U8B4I0	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Uncharacterized protein LOC104607156.	0.538
LOC104586131	LOC104607521	A0A1U7YNN4	A0A1U8B5M2	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	Protein FAR1-RELATED SEQUENCE 5-like.	0.452
LOC104586161	LOC104586131	A0A1U7YRJ7	A0A1U7YNN4	Uncharacterized protein LOC104586161 isoform X1.	Zinc finger BED domain-containing protein RICESLEEPER 2-like.	0.505
LOC104586161	LOC104588069	A0A1U7YRJ7	A0A1U7YUU9	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104588069.	0.516
LOC104586161	LOC104592496	A0A1U7YRJ7	A0A1U7ZPZ6	Uncharacterized protein LOC104586161 isoform X1.	Zinc finger BED domain-containing protein DAYSLEEPER-like.	0.509
LOC104586161	LOC104597132	A0A1U7YRJ7	A0A1U7ZRH5	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104597132.	0.520
LOC104586161	LOC104597134	A0A1U7YRJ7	A0A1U8A4X0	Uncharacterized protein LOC104586161 isoform X1.	Uncharacterized protein LOC104597134.	0.524