STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104608005Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1. (293 aa)    
Predicted Functional Partners:
LOC104591446
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
   
 
  0.753
LOC104611780
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic.
  
   
 0.665
LOC104587383
Cytochrome c biogenesis protein CCS1, chloroplastic isoform X1.
  
  
 0.655
LOC104593372
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.637
LOC104595486
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.637
LOC104611911
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.637
LOC104612208
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.637
LOC104591874
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic.
   
  
 0.612
LOC104612704
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic.
  
   
 0.605
LOC104593584
Uncharacterized protein LOC104593584.
  
   
 0.540
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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