STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104612423CRM-domain containing factor CFM3A, chloroplastic/mitochondrial isoform X1. (914 aa)    
Predicted Functional Partners:
LOC104602620
mRNA-decapping enzyme subunit 2.
     
 0.533
LOC104607121
CRS2-associated factor 2, chloroplastic.
 
 
 
0.523
LOC104593523
Ribonuclease III domain-containing protein RNC1, chloroplastic.
    
 
 0.498
LOC104603974
Protein ROOT PRIMORDIUM DEFECTIVE 1.
    
 
 0.498
LOC104607049
Uncharacterized protein LOC104607049.
      
 0.489
LOC104587486
Basic proline-rich protein isoform X1.
    
 
 0.486
rps16
30S ribosomal protein S16, chloroplastic.
      
 0.465
LOC104601533
CRS2-associated factor 1, chloroplastic.
 
 
 
0.459
atpF
ATP synthase subunit b, chloroplastic; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).
      
 0.430
rpl16
50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.
      
 0.422
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.