STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104613488Glucan endo-1,3-beta-glucosidase 14-like isoform X1; Belongs to the glycosyl hydrolase 17 family. (399 aa)    
Predicted Functional Partners:
LOC104599561
Actin-related protein 4; Belongs to the actin family.
    
 0.690
LOC104609580
Armadillo repeat-containing protein LFR-like.
    
 0.569
LOC104588404
SWI/SNF complex component SNF12 homolog.
    
 0.527
LOC104592908
SWI/SNF complex component SNF12 homolog.
    
 0.527
LOC104585574
Chromatin structure-remodeling complex protein BSH.
    
 0.478
LOC104599838
Uncharacterized protein LOC104599838.
    
 0.478
LOC104597876
Uncharacterized protein LOC104597876 isoform X1.
    
 0.478
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.466
LOC104610188
Uncharacterized protein At5g08430-like isoform X1.
    
 0.452
LOC104598790
Bromodomain and WD repeat-containing protein 1.
   
  0.404
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.