STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104610815tyrosine/DOPA decarboxylase 2-like. (511 aa)    
Predicted Functional Partners:
LOC104588375
Serotonin N-acetyltransferase 1, chloroplastic isoform X1.
   
 
 0.926
LOC104588574
Histidinol-phosphate aminotransferase, chloroplastic isoform X1.
    
 0.924
LOC104597826
Uncharacterized N-acetyltransferase ycf52.
     
 0.918
LOC104592560
Probable aminotransferase TAT2 isoform X1.
    
 0.910
LOC104599456
Probable aminotransferase TAT2 isoform X1.
    
 0.910
LOC104608160
Probable aminotransferase TAT2.
    
 0.910
LOC104596731
Extradiol ring-cleavage dioxygenase-like.
   
 
  0.901
LOC104609146
Extradiol ring-cleavage dioxygenase-like.
   
 
  0.901
LOC104608304
Extradiol ring-cleavage dioxygenase-like.
   
 
  0.901
LOC104589645
Tryptophan synthase alpha chain isoform X1; Belongs to the TrpA family.
    
 0.803
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.