STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104613293Dipeptide epimerase. (472 aa)    
Predicted Functional Partners:
LOC104598929
Uncharacterized protein C57A7.06.
   
 0.805
LOC104600367
Protein SDE2 homolog.
    
 0.780
LOC104600767
Calcium sensing receptor, chloroplastic.
    
 0.738
LOC104606469
AP-2 complex subunit mu-like; Belongs to the adaptor complexes medium subunit family.
    
 0.738
LOC104610374
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.738
LOC104603787
Nucleolar complex protein 4 homolog isoform X1.
   
  0.715
LOC104607288
THO complex subunit 2 isoform X1.
   
 0.691
LOC104604154
Something about silencing protein 10.
   
 0.686
LOC104597882
Nucleolar protein 14.
   
 0.673
LOC104608293
pre-mRNA-splicing factor CWC25 homolog.
    
 0.661
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.