LOC104612511 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104612511

Uncharacterized protein LOC104612511 isoform X1. (613 aa)

Predicted Functional Partners:

LOC104608843

0.523

LOC104611986

0.523

LOC104599007

0.496

LOC104606108

0.496

LOC104607930

0.495

LOC104598503

0.451

LOC104595633

0.422

LOC104600969

0.411

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104595633	LOC104612511	A0A1U8A108	A0A1U8BMI1	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein LOC104612511 isoform X1.	0.422
LOC104598503	LOC104612511	A0A1U8AA34	A0A1U8BMI1	CCR4-NOT transcription complex subunit 1 isoform X1.	Uncharacterized protein LOC104612511 isoform X1.	0.451
LOC104599007	LOC104612511	A0A1U8AC13	A0A1U8BMI1	acyl-CoA-binding domain-containing protein 4 isoform X1.	Uncharacterized protein LOC104612511 isoform X1.	0.496
LOC104600969	LOC104612511	A0A1U8AJL8	A0A1U8BMI1	Mitochondrial import receptor subunit TOM9-2-like.	Uncharacterized protein LOC104612511 isoform X1.	0.411
LOC104606108	LOC104612511	A0A1U8ASS5	A0A1U8BMI1	acyl-CoA-binding domain-containing protein 4-like isoform X1.	Uncharacterized protein LOC104612511 isoform X1.	0.496
LOC104607930	LOC104612511	A0A1U8AZ19	A0A1U8BMI1	Protein LSM12 homolog A.	Uncharacterized protein LOC104612511 isoform X1.	0.495
LOC104608843	LOC104611986	A0A1U8Q8Y7	A0A1U8QC48	Cytochrome c oxidase copper chaperone-like.	Cytochrome c oxidase copper chaperone 1-like.	0.902
LOC104608843	LOC104612511	A0A1U8Q8Y7	A0A1U8BMI1	Cytochrome c oxidase copper chaperone-like.	Uncharacterized protein LOC104612511 isoform X1.	0.523
LOC104611986	LOC104608843	A0A1U8QC48	A0A1U8Q8Y7	Cytochrome c oxidase copper chaperone 1-like.	Cytochrome c oxidase copper chaperone-like.	0.902
LOC104611986	LOC104612511	A0A1U8QC48	A0A1U8BMI1	Cytochrome c oxidase copper chaperone 1-like.	Uncharacterized protein LOC104612511 isoform X1.	0.523
LOC104612511	LOC104595633	A0A1U8BMI1	A0A1U8A108	Uncharacterized protein LOC104612511 isoform X1.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.422
LOC104612511	LOC104598503	A0A1U8BMI1	A0A1U8AA34	Uncharacterized protein LOC104612511 isoform X1.	CCR4-NOT transcription complex subunit 1 isoform X1.	0.451
LOC104612511	LOC104599007	A0A1U8BMI1	A0A1U8AC13	Uncharacterized protein LOC104612511 isoform X1.	acyl-CoA-binding domain-containing protein 4 isoform X1.	0.496
LOC104612511	LOC104600969	A0A1U8BMI1	A0A1U8AJL8	Uncharacterized protein LOC104612511 isoform X1.	Mitochondrial import receptor subunit TOM9-2-like.	0.411
LOC104612511	LOC104606108	A0A1U8BMI1	A0A1U8ASS5	Uncharacterized protein LOC104612511 isoform X1.	acyl-CoA-binding domain-containing protein 4-like isoform X1.	0.496
LOC104612511	LOC104607930	A0A1U8BMI1	A0A1U8AZ19	Uncharacterized protein LOC104612511 isoform X1.	Protein LSM12 homolog A.	0.495
LOC104612511	LOC104608843	A0A1U8BMI1	A0A1U8Q8Y7	Uncharacterized protein LOC104612511 isoform X1.	Cytochrome c oxidase copper chaperone-like.	0.523
LOC104612511	LOC104611986	A0A1U8BMI1	A0A1U8QC48	Uncharacterized protein LOC104612511 isoform X1.	Cytochrome c oxidase copper chaperone 1-like.	0.523