STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104613502Uncharacterized protein LOC104613502. (704 aa)    
Predicted Functional Partners:
LOC104592266
Uncharacterized protein LOC104592266 isoform X1.
  
  
 0.750
LOC104613210
Uncharacterized protein LOC104613210 isoform X1.
  
   
 0.730
LOC104599762
Probable E3 ubiquitin-protein ligase HERC2.
     
 0.574
LOC104595764
Pentatricopeptide repeat-containing protein At1g74900, mitochondrial.
      
 0.564
LOC104597913
Transcription termination factor MTERF15, mitochondrial.
      
 0.560
LOC104593070
Pentatricopeptide repeat-containing protein At3g48250, chloroplastic.
   
  
 0.552
LOC104605814
Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1.
      
 0.537
LOC104593949
Uncharacterized protein LOC104593949.
      
 0.533
LOC104596838
Pentatricopeptide repeat-containing protein At1g06710, mitochondrial.
   
  
 0.503
LOC104599162
Pentatricopeptide repeat-containing protein At1g51965, mitochondrial.
      
 0.493
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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