STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104589219Probable inactive receptor-like protein kinase At3g56050. (162 aa)    
Predicted Functional Partners:
LOC104590533
Trafficking protein particle complex subunit 8 isoform X1.
      
 0.569
LOC104596007
Uncharacterized protein LOC104596007 isoform X1.
      
 0.569
LOC104604974
Uncharacterized protein LOC104604974.
   
 
 0.535
LOC104599668
ATP-dependent zinc metalloprotease FTSH 12, chloroplastic.
    
 
 0.486
LOC104610249
Nuclear pore complex protein NUP160.
    
 
 0.477
LOC104598354
U4/U6 small nuclear ribonucleoprotein PRP4-like protein.
     
 0.434
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.