LOC104608796 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104608796

Centromere protein V. (140 aa)

Predicted Functional Partners:

LOC104594821

0.626

LOC104596194

0.626

LOC104602649

0.626

LOC104612681

0.626

LOC104587949

0.605

LOC104587950

0.605

LOC104585749

0.605

LOC104587947

0.605

LOC104589271

0.605

LOC104591592

0.605

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104585749	LOC104608796	A0A1U7Z2Y9	A0A1U8Q2H4	Protein HEAT-STRESS-ASSOCIATED 32.	Centromere protein V.	0.605
LOC104587947	LOC104608796	A0A1U7ZA61	A0A1U8Q2H4	Alcohol dehydrogenase-like.	Centromere protein V.	0.605
LOC104587949	LOC104608796	A0A1U7YUJ1	A0A1U8Q2H4	Alcohol dehydrogenase 1.	Centromere protein V.	0.605
LOC104587950	LOC104608796	A0A1U7YX54	A0A1U8Q2H4	Alcohol dehydrogenase 3-like.	Centromere protein V.	0.605
LOC104589271	LOC104608796	A0A1U7ZD37	A0A1U8Q2H4	Alcohol dehydrogenase.	Centromere protein V.	0.605
LOC104591592	LOC104608796	A0A1U7ZKA5	A0A1U8Q2H4	Alcohol dehydrogenase-like 6.	Centromere protein V.	0.605
LOC104594821	LOC104602649	A0A1U7ZKE7	A0A1U8APZ9	Syntaxin-71-like; Belongs to the syntaxin family.	Syntaxin-71-like; Belongs to the syntaxin family.	0.900
LOC104594821	LOC104608796	A0A1U7ZKE7	A0A1U8Q2H4	Syntaxin-71-like; Belongs to the syntaxin family.	Centromere protein V.	0.626
LOC104596194	LOC104608796	A0A1U8A2Z8	A0A1U8Q2H4	Sorbitol dehydrogenase.	Centromere protein V.	0.626
LOC104596194	LOC104612681	A0A1U8A2Z8	A0A1U8BAY7	Sorbitol dehydrogenase.	Sorbitol dehydrogenase-like.	0.900
LOC104602649	LOC104594821	A0A1U8APZ9	A0A1U7ZKE7	Syntaxin-71-like; Belongs to the syntaxin family.	Syntaxin-71-like; Belongs to the syntaxin family.	0.900
LOC104602649	LOC104608796	A0A1U8APZ9	A0A1U8Q2H4	Syntaxin-71-like; Belongs to the syntaxin family.	Centromere protein V.	0.626
LOC104608796	LOC104585749	A0A1U8Q2H4	A0A1U7Z2Y9	Centromere protein V.	Protein HEAT-STRESS-ASSOCIATED 32.	0.605
LOC104608796	LOC104587947	A0A1U8Q2H4	A0A1U7ZA61	Centromere protein V.	Alcohol dehydrogenase-like.	0.605
LOC104608796	LOC104587949	A0A1U8Q2H4	A0A1U7YUJ1	Centromere protein V.	Alcohol dehydrogenase 1.	0.605
LOC104608796	LOC104587950	A0A1U8Q2H4	A0A1U7YX54	Centromere protein V.	Alcohol dehydrogenase 3-like.	0.605
LOC104608796	LOC104589271	A0A1U8Q2H4	A0A1U7ZD37	Centromere protein V.	Alcohol dehydrogenase.	0.605
LOC104608796	LOC104591592	A0A1U8Q2H4	A0A1U7ZKA5	Centromere protein V.	Alcohol dehydrogenase-like 6.	0.605
LOC104608796	LOC104594821	A0A1U8Q2H4	A0A1U7ZKE7	Centromere protein V.	Syntaxin-71-like; Belongs to the syntaxin family.	0.626
LOC104608796	LOC104596194	A0A1U8Q2H4	A0A1U8A2Z8	Centromere protein V.	Sorbitol dehydrogenase.	0.626

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

31

average node degree:

5.64

avg. local clustering coefficient:

0.739

expected number of edges:

20

PPI enrichment p-value:

0.0104

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006096

Glycolytic process

6 of 12

1.94

3.13

7.92e-08

GO:0006091

Generation of precursor metabolites and energy

7 of 27

1.66

2.62

7.92e-08

GO:0006006

Glucose metabolic process

4 of 8

1.94

2.31

1.28e-05

GO:0006094

Gluconeogenesis

3 of 5

2.02

1.82

0.00024

GO:0016310

Phosphorylation

8 of 109

1.11

1.32

1.07e-06

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000015

Phosphopyruvate hydratase complex

2 of 2

2.25

0.95

0.0177

GO:0009986

Cell surface

2 of 3

2.07

0.93

0.0177

GO:0009274

Peptidoglycan-based cell wall

2 of 5

1.85

0.87

0.0204

GO:0005576

Extracellular region

2 of 13

1.43

0.63

0.0498

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:25152889

(2014) Metabolic Engineering of Escherichia coli for Production of Mixed-Acid Fermentation End Products.

5 of 12

1.87

2.43

3.85e-06

PMID:32432104

(2020) Recent Advances in Metabolically Engineered Microorganisms for the Production of Aromatic Chemicals Derived From Aromatic Amino Acids.

3 of 8

1.82

1.22

0.0035

PMID:35638860

(2022) Metatranscriptomics Unravel Composition, Drivers, and Functions of the Active Microorganisms in Light-Flavor Liquor Fermentation.

3 of 11

1.68

1.11

0.0051

PMID:38298832

(2024) Staphylococcus aureus biofilm: Formulation, regulatory, and emerging natural products-derived therapeutics.

2 of 2

2.25

1.0

0.0139

PMID:37969339

(2023) Complete genome sequence of Pediococcus acidilactici CACC 537 isolated from canine.

2 of 3

2.07

0.92

0.0185

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2073

Glycolysis, and Aldehyde-lyase activity

8 of 15

1.97

4.48

7.08e-12

CL:2067

Carbon metabolism, and Alcohol dehydrogenase-like, N-terminal

9 of 63

1.4

2.34

6.10e-10

CL:2075

Glycolysis, and Aldehyde-lyase activity

4 of 8

1.94

2.32

1.20e-05

CL:982

Glycerate kinase, and Oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

2 of 5

1.85

0.84

0.0245

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

paci00260

Glycine, serine and threonine metabolism

4 of 7

2.0

2.68

1.97e-06

paci00680

Methane metabolism

5 of 15

1.77

2.64

3.74e-07

paci00010

Glycolysis / Gluconeogenesis

7 of 35

1.55

2.57

8.86e-09

paci01200

Carbon metabolism

9 of 59

1.43

2.53

6.95e-11

paci01230

Biosynthesis of amino acids

7 of 37

1.52

2.5

1.00e-08

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0324

Glycolysis

6 of 9

2.07

3.77

4.78e-09

KW-0312

Gluconeogenesis

3 of 4

2.12

1.76

0.00037

KW-0964

Secreted

2 of 3

2.07

0.97

0.0152

KW-0456

Lyase

3 of 25

1.32

0.78

0.0161

KW-0670

Pyruvate

2 of 9

1.59

0.66

0.0491

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01193

Enolase, N-terminal domain

2 of 2

2.25

0.96

0.0166

SM01192

Enolase, C-terminal TIM barrel domain

2 of 2

2.25

0.96

0.0166

SM00855

Phosphoglycerate mutase family

2 of 6

1.77

0.82

0.0256

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2024

Credits

Access

Info

About