STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104602627Classical arabinogalactan protein 1. (168 aa)    
Predicted Functional Partners:
LOC104596846
ATP-dependent DNA helicase mph1 isoform X1.
    
 0.729
LOC104595717
Deoxyuridine 5'-triphosphate nucleotidohydrolase-like.
   
 0.616
LOC104598866
Nicotinamide adenine dinucleotide transporter 1, chloroplastic; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 0.616
LOC104601889
Deoxyuridine 5'-triphosphate nucleotidohydrolase-like.
   
 0.616
LOC104610028
Uncharacterized protein LOC104610028.
    
 0.564
LOC104589128
E3 ubiquitin-protein ligase FANCL isoform X1.
    
 0.545
LOC104594017
DNA excision repair protein ERCC-1 isoform X1.
    
 0.533
LOC104608879
Crossover junction endonuclease MUS81 isoform X1.
   
 0.503
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.489
LOC104606378
Uncharacterized protein LOC104606378.
   
 0.472
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.