STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104613171Uncharacterized protein LOC104613171 isoform X1. (461 aa)    
Predicted Functional Partners:
LOC104589955
Structural maintenance of chromosomes protein 5 isoform X1.
     
 0.660
LOC104603531
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
     
 0.565
LOC104593137
Protein MODIFIER OF SNC1 1.
      
 0.564
LOC104611666
Zinc finger SWIM domain-containing protein 7.
      
 0.560
LOC104598515
Structural maintenance of chromosomes protein 6B-like isoform X1.
     
 0.552
LOC104600046
Nuclear pore complex protein NUP96.
      
 0.539
LOC104594646
DNA repair protein RAD51 homolog 4 isoform X1.
      
 0.524
LOC104599486
E3 SUMO-protein ligase MMS21.
     
 0.514
LOC104601261
Nuclear pore complex protein NUP88 isoform X1.
      
 0.491
LOC104607761
Suppressor of RPS4-RLD 1.
      
 0.483
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.